S-3 S-3 EX-FILING FEES 0001840233 Xilio Therapeutics, Inc. N/A N/A 0.0001381 0.0001381 0.0001381 0.0001381 0.0001381 0001840233 2026-05-06 2026-05-06 0001840233 1 2026-05-06 2026-05-06 0001840233 2 2026-05-06 2026-05-06 0001840233 3 2026-05-06 2026-05-06 0001840233 4 2026-05-06 2026-05-06 0001840233 5 2026-05-06 2026-05-06 0001840233 6 2026-05-06 2026-05-06 0001840233 7 2026-05-06 2026-05-06 0001840233 8 2026-05-06 2026-05-06 0001840233 9 2026-05-06 2026-05-06 0001840233 10 2026-05-06 2026-05-06 0001840233 11 2026-05-06 2026-05-06 0001840233 12 2026-05-06 2026-05-06 iso4217:USD xbrli:pure xbrli:shares

Calculation of Filing Fee Tables

S-3

Xilio Therapeutics, Inc.

Table 1: Newly Registered and Carry Forward Securities ☐Not Applicable

Security Type

Security Class Title

Fee Calculation or Carry Forward Rule

Amount Registered

Proposed Maximum Offering Price Per Unit

Maximum Aggregate Offering Price

Fee Rate

Amount of Registration Fee

Carry Forward Form Type

Carry Forward File Number

Carry Forward Initial Effective Date

Filing Fee Previously Paid in Connection with Unsold Securities to be Carried Forward

Newly Registered Securities
Debt Debt Securities 457(o)
Equity Common Stock, par value $0.0001 per share 457(o)
Equity Preferred Stock, par value $0.0001 per share 457(o)
Other Units 457(o)
Other Warrants 457(o)
Fees to be Paid 1 Unallocated (Universal) Shelf 457(o) $ 240,027,982.00 0.0001381 $ 33,147.86
Fees Previously Paid
Carry Forward Securities
Carry Forward Securities Debt Debt Securities 415(a)(6) S-3 333-285703 05/08/2025
Carry Forward Securities Equity Common Stock, par value $0.0001 per share 415(a)(6) S-3 333-285703 05/08/2025
Carry Forward Securities Equity Preferred Stock, par value $0.0001 per share 415(a)(6) S-3 333-285703 05/08/2025
Carry Forward Securities Other Units 415(a)(6) S-3 333-285703 05/08/2025
Carry Forward Securities Other Warrants 415(a)(6) S-3 333-285703 05/08/2025
Carry Forward Securities 2 Unallocated (Universal) Shelf 415(a)(6) $ 9,972,018.00 S-3 333-285703 05/08/2025 $ 1,526.72

Total Offering Amounts:

$ 250,000,000.00

$ 33,147.86

Total Fees Previously Paid:

$ 0.00

Total Fee Offsets:

$ 0.00

Net Fee Due:

$ 33,147.86

Offering Note

1

(1) Pursuant to Instruction 2.A(iii)(b) of Item 16(b) of Form S-3, this information is not required to be included. An indeterminate amount of the securities of each identified class is being registered as may from time to time be offered under this registration statement at indeterminate prices, along with an indeterminate number of securities that may be issued upon exercise, settlement, exchange or conversion of securities offered or sold under this registration statement, as shall have an aggregate initial offering price of up to $250,000,000. Pursuant to Rule 416 under the Securities Act of 1933, as amended (the "Securities Act"), this registration statement also covers any additional securities that may be offered or issued in connection with any stock split, stock dividend or pursuant to anti-dilution provisions of any of the securities. Separate consideration may or may not be received for securities that are issuable upon conversion, exercise or exchange of other securities. In addition, the total amount to be registered and the proposed maximum offering price are estimated solely for the purpose of calculating the registration fee pursuant to Rule 457(o) under the Securities Act. (2) Units may be issued under a unit agreement and will represent an interest in one or more securities registered under this registration statement including shares of common stock or preferred stock, debt securities or warrants, in any combination, which may or may not be separable from one another. (3) Pursuant to Rule 415(a)(6) under the Securities Act, the securities registered pursuant to this registration statement include $9,972,018 of unsold securities (the "Unsold Securities") previously registered pursuant to the Registration Statement on Form S-3 (File No. 333-285703), which was declared effective on May 8, 2025 (the "Prior Registration Statement"). In connection with the filing of the Prior Registration Statement, the registrant paid a filing fee of $1,526.72 associated with the offering of the Unsold Securities (based on the filing fee rate in effect at the time of the filing of the Prior Registration Statement). The filing fee associated with the offering of the Unsold Securities is hereby carried forward to be applied to the Unsold Securities registered hereunder, and no additional filing fee is due with respect to the Unsold Securities in connection with the filing of this Registration Statement. The registrant is also registering new securities on this registration statement with an aggregate initial offering price of $240,027,982 (the "New Securities"), which aggregate offering price is not specified as to each class of securities. A filing fee of $33,147.86 with respect to the New Securities is being paid in connection with the filing of this registration statement. To the extent that, after the filing date hereof and prior to the effectiveness of this registration statement, the registrant sells any Unsold Securities pursuant to the Prior Registration Statement, the registrant will identify in a pre-effective amendment to this registration statement the updated number of Unsold Securities from the Prior Registration Statement to be included in this registration statement pursuant to Rule 415(a)(6) and the updated amount of new securities to be registered on this registration statement. Pursuant to Rule 415(a)(6), the offering of securities under the Prior Registration Statement will be deemed terminated as of the date of effectiveness of this registration statement.

2

(3) Pursuant to Rule 415(a)(6) under the Securities Act, the securities registered pursuant to this registration statement include $9,972,018 of unsold securities (the "Unsold Securities") previously registered pursuant to the Registration Statement on Form S-3 (File No. 333-285703), which was declared effective on May 8, 2025 (the "Prior Registration Statement"). In connection with the filing of the Prior Registration Statement, the registrant paid a filing fee of $1,526.72 associated with the offering of the Unsold Securities (based on the filing fee rate in effect at the time of the filing of the Prior Registration Statement). The filing fee associated with the offering of the Unsold Securities is hereby carried forward to be applied to the Unsold Securities registered hereunder, and no additional filing fee is due with respect to the Unsold Securities in connection with the filing of this Registration Statement. The registrant is also registering new securities on this registration statement with an aggregate initial offering price of $240,027,982 (the "New Securities"), which aggregate offering price is not specified as to each class of securities. A filing fee of $33,147.86 with respect to the New Securities is being paid in connection with the filing of this registration statement. To the extent that, after the filing date hereof and prior to the effectiveness of this registration statement, the registrant sells any Unsold Securities pursuant to the Prior Registration Statement, the registrant will identify in a pre-effective amendment to this registration statement the updated number of Unsold Securities from the Prior Registration Statement to be included in this registration statement pursuant to Rule 415(a)(6) and the updated amount of new securities to be registered on this registration statement. Pursuant to Rule 415(a)(6), the offering of securities under the Prior Registration Statement will be deemed terminated as of the date of effectiveness of this registration statement.

Table 2: Fee Offset Claims and Sources ☑Not Applicable
Registrant or Filer Name Form or Filing Type File Number Initial Filing Date Filing Date Fee Offset Claimed Security Type Associated with Fee Offset Claimed Security Title Associated with Fee Offset Claimed Unsold Securities Associated with Fee Offset Claimed Unsold Aggregate Offering Amount Associated with Fee Offset Claimed Fee Paid with Fee Offset Source
Rules 457(b) and 0-11(a)(2)
Fee Offset Claims
Fee Offset Sources
Rule 457(p)
Fee Offset Claims
Fee Offset Sources
Table 3: Combined Prospectuses ☑Not Applicable

Security Type

Security Class Title

Amount of Securities Previously Registered

Maximum Aggregate Offering Price of Securities Previously Registered

Form Type

File Number

Initial Effective Date